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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
03/11/2014 |
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Data da última atualização: |
05/04/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
BARROS-CARVALHO, G. A.; PASCHOAL, A. R.; MARCELINO-GUIMARÃES, F. C.; HUNGRIA, M. |
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Afiliação: |
GESIELE ALMEIDA BARROS DE CARVALHO, CNPq - bolsista; ALEXANDRE ROSSI PASCHOAL, UTFPR; FRANCISMAR CORRÊA MARCELINO-GUIMARÃES, CNPSO; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
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Título: |
Prediction of potential novel microRNAs in soybean when in symbiosis. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
Genetics and Molecular Research, Ribeirão Preto, v. 13, n. 4, p. 8519-8529, 2014. |
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ISSN: |
1676-5680 |
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DOI: |
10.4238/2014.October.20.28 |
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Idioma: |
Inglês |
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Conteúdo: |
MicroRNAs (miRNAs) are small molecules, noncoding proteins that are involved in many biological processes, especially in plants; among these processes is nodulation in the legume. Biological nitrogen fixation is a key process, with critical importance to the soybean crop. This study aimed to identify the potential of novel miRNAs to act during the root nodulation process. We utilized a set of transcripts that were differentially expressed in soybean roots 10 days after inoculation with Bradyrhizobium japonicum, which were obtained in a previous study, and performed a set of computational analyses that led us to select new miRNAs potentially involved in nodulation. Among these analyses, the set of transcripts were submitted to an in silico annotation of noncoding RNAs, including a search of similarity against miRNA public databases, ab initio tools for miRNA identification, structural search against miRNA families, prediction of the secondary structure of miRNA precursors, and prediction of the sequences of mature miRNAs. Subsequently, we applied filter procedures based on miRNA selections described in the literature (e.g., free energy value). In the next step, a manual curation inspection of the annotation was performed and the top candidates were selected and used for prediction of potential target genes, which were later checked manually in the database of the soybean genome. This prediction led us to the identification of 9 potential new miRNAs; among these, 4 were conserved in other plants. Moreover, we predicted their target genes might play important roles in the regulation of nodulation. MenosMicroRNAs (miRNAs) are small molecules, noncoding proteins that are involved in many biological processes, especially in plants; among these processes is nodulation in the legume. Biological nitrogen fixation is a key process, with critical importance to the soybean crop. This study aimed to identify the potential of novel miRNAs to act during the root nodulation process. We utilized a set of transcripts that were differentially expressed in soybean roots 10 days after inoculation with Bradyrhizobium japonicum, which were obtained in a previous study, and performed a set of computational analyses that led us to select new miRNAs potentially involved in nodulation. Among these analyses, the set of transcripts were submitted to an in silico annotation of noncoding RNAs, including a search of similarity against miRNA public databases, ab initio tools for miRNA identification, structural search against miRNA families, prediction of the secondary structure of miRNA precursors, and prediction of the sequences of mature miRNAs. Subsequently, we applied filter procedures based on miRNA selections described in the literature (e.g., free energy value). In the next step, a manual curation inspection of the annotation was performed and the top candidates were selected and used for prediction of potential target genes, which were later checked manually in the database of the soybean genome. This prediction led us to the identification of 9 potential new miRNAs; among these, 4 were conser... Mostrar Tudo |
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Thesagro: |
Soja. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/110912/1/Prediction-of-potential-novel-microRNAs-in-soybean-when-in-symbiosis.pdf
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Marc: |
LEADER 02227naa a2200193 a 4500
001 1999050
005 2022-04-05
008 2014 bl uuuu u00u1 u #d
022 $a1676-5680
024 7 $a10.4238/2014.October.20.28$2DOI
100 1 $aBARROS-CARVALHO, G. A.
245 $aPrediction of potential novel microRNAs in soybean when in symbiosis.$h[electronic resource]
260 $c2014
520 $aMicroRNAs (miRNAs) are small molecules, noncoding proteins that are involved in many biological processes, especially in plants; among these processes is nodulation in the legume. Biological nitrogen fixation is a key process, with critical importance to the soybean crop. This study aimed to identify the potential of novel miRNAs to act during the root nodulation process. We utilized a set of transcripts that were differentially expressed in soybean roots 10 days after inoculation with Bradyrhizobium japonicum, which were obtained in a previous study, and performed a set of computational analyses that led us to select new miRNAs potentially involved in nodulation. Among these analyses, the set of transcripts were submitted to an in silico annotation of noncoding RNAs, including a search of similarity against miRNA public databases, ab initio tools for miRNA identification, structural search against miRNA families, prediction of the secondary structure of miRNA precursors, and prediction of the sequences of mature miRNAs. Subsequently, we applied filter procedures based on miRNA selections described in the literature (e.g., free energy value). In the next step, a manual curation inspection of the annotation was performed and the top candidates were selected and used for prediction of potential target genes, which were later checked manually in the database of the soybean genome. This prediction led us to the identification of 9 potential new miRNAs; among these, 4 were conserved in other plants. Moreover, we predicted their target genes might play important roles in the regulation of nodulation.
650 $aSoja
700 1 $aPASCHOAL, A. R.
700 1 $aMARCELINO-GUIMARÃES, F. C.
700 1 $aHUNGRIA, M.
773 $tGenetics and Molecular Research, Ribeirão Preto$gv. 13, n. 4, p. 8519-8529, 2014.
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Registro original: |
Embrapa Soja (CNPSO) |
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| Registros recuperados : 9 | |
| 1. |  | BRITO, K. S. A. de; NASCIMENTO, E. C. S.; COSTA, F. A. M. da; ANDRADE, L. O. de; LIMA, V. L. A. de. Cultivo de mudas de girassol ornamental em diferentes substratos sob irrigação com água residuária. CONGRESSO BRASILEIRO DE MAMONA, 5.; SIMPÓSIO INTERNACIONAL DE OLEAGINOSAS ENERGÉTICAS, 2.; FÓRUM CAPIXABA DE PINHÃO-MANSO, 1., 2012, Guarapari. Desafios e Oportunidades: anais. Campina Grande: Embrapa Algodão, 2012. p. 239| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Algodão. |
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| 2. | | BRITO, M. E. B.; BRITO, K. S. A. de; FERNANDES, P. D.; GHEYI, H. R.; SUASSUNA, J. F.; SOARES FILHO, W. dos S.; MELO, A. S. de; XAVIER, D. A. Growth of ungrafted and grafted citrus rootstocks under saline water irrigation. African Journal of Agricultural Research, v. 9, n. 50, p. 3600-3609, December, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 3. | | BRITO, M. E. B.; FERNANDES, P. D.; GHEYI, H. R.; CARDOSO, J. A. F.; MELO, A. S. de; SOARES FILHO, W. dos S.; LIMA, A. N. de; BRITO, K. S. A. de. Citrus rootstock, varieties and trifoliate hybrids, under saline stress. In: INTERNATIONAL CONFERENCE OF AGRICULTURAL ENGINEERING; BRAZILIAN CONGRESS OF AGRICULTURAL ENGINEERING, 38.; INTERNATIONAL LIVESTOCK ENVIRONMENT SYMPOSIUM, 8., 2008, Iguassu Falls. Technology for all: sharing the knowledge for development: proceedings. [Foz do Iguaçu]: CIGR, 2008. PAP 1180.pdf.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 4. | | OLIVEIRA, A. C. M. de; SUASSUNA, J. F.; FERNANDES, P. D.; NASCIMENTO, R. do; BRITO, K. S. A. de; SOARES FILHO, W. dos S. Estudo do teor relativo de clorofila em porta-enxertos de citros em tubetes, sob níveis de estresse salino. In:CONGRESSO BRASILEIRO DE FRUTICULTURA, 21., 2010, Natal. Frutas: saúde, inovação e responsabilidade: anais. Natal: Sociedade Brasileira de Fruticultura, 2010. pdf 2752| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 5. | | PAULA FILHO, G. X. de; MENDES, D. M.; SILVA, D. A. T. da; COSTA, F. da S.; SUASSUNA, J. F.; BRITO, K. S. A. de; REIS, M. dos; SOUSA SOBRINO, M.; BORGES, W. L. Atualidades e desafios para o desenvolvimento rural sustentável no estado do Amapá. In: PORTO, J.; OLIVEIRA, N. M. de (org.). Entre espaços regionais e locais: intenções de desenvolvimento. Maringá: Uniedusul, 2021. p. 80-88.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Amapá. |
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| 6. | | SOUSA, J. R. M. de; ALVINO, F. C. G.; BRITO, M. E. B.; BRITO, K. S. A. de; MELO, A. S. de; SOARES FILHO, W. dos S. Índice de sobrevivência de portaenxertos de citros enxertados com pomeleiro sob estresse salino. In: CONGRESSO BRASILEIRO DE FRUTICULTURA, 21., 2010, Natal. Frutas: saúde, inovação e responsabilidade: anais. Natal: Sociedade Brasileira de Fruticultura, 2010. pdf 2309| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 7. | | SOUZA, A. L. V.; COELHO, E. F.; CAMPOS, M. S.; BRITO, K. S.; MELO, D. M. DE; OLIVEIRA, B. R. de. Ajustes de modelos matemáticos para o crescimento da Bananeira Pacovan em condições de semiárido. In: INOVAGRI INTERNATIONAL MEETING, 3., 2015, Fortaleza. Anais... Fortaleza: INI, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 8. | | SUASSUNA, J. F.; MAIA JÚNIOR, S. de O.; BRITO, K. S. A.; ANJOS, L. A. dos; FERNANDES, P. D.; ARRIEL, N. H. C. Germinação e crescimento inicial de genótipos de gergelim irrigados com água salina. CONGRESSO BRASILEIRO DE MAMONA, 5.; SIMPÓSIO INTERNACIONAL DE OLEAGINOSAS ENERGÉTICAS, 2.; FÓRUM CAPIXABA DE PINHÃO-MANSO, 1., 2012, Guarapari. Desafios e Oportunidades: anais. Campina Grande: Embrapa Algodão, 2012. p. 250| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Algodão. |
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| 9. | | SUASSUNA, J. F.; OLIVEIRA, A. C. M. de; FERNANDES, P. D.; BRITO, K. S. A.; SOUSA, M. S. da S.; SOARES FILHO, W. dos S. Alteração na fitomassa de portaenxertos de citros sob salinidade da água de irrigação. In:CONGRESSO BRASILEIRO DE FRUTICULTURA, 21., 2010, Natal. Frutas: saúde, inovação e responsabilidade: anais. Natal: Sociedade Brasileira de Fruticultura, 2010. pdf 2749| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 9 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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